Mean over time code — tfl_fig

Mean with error bars by visit and group.

Usage

tfl_fig_mean(
  adam = NULL,
  style = c("se", "sd", "ci", "se_n"),
  param = "ALT",
  data = "ADLB",
  value = "AVAL",
  visit = "AVISITN",
  visit_label = "AVISIT",
  group = "TRT01A",
  pop = "SAFFL",
  where = NULL,
  flag = NULL,
  legend = "bottom",
  palette = "treatment",
  key = "USUBJID",
  theme = "boxed",
  title = NULL,
  width = 7.5,
  height = 4.5,
  dpi = 300,
  units = "in",
  file = NULL,
  plot_id = "mean"
)

Arguments

adam: Optional ADaM data (tfl_read_adam()); values found in the data (groups, colours) are written literally into the code.
style: se (mean +/- SE), sd (mean +/- SD), ci (mean with 95% CI) or se_n (mean +/- SE with a table of n below).
param: PARAMCD of the time-to-event parameter.
data: Dataset name.
value: Analysis variable (AVAL, CHG, PCHG, ...).
visit, visit_label: Visit order variable and its label.
group: Treatment variable; its first value is the reference.
pop: Population flag (== "Y"); NULL for none.
where: Extra record condition as R code, e.g. 'AVISIT != "Retrieval"'; NULL for none.
flag: Optional record flag (== "Y"), e.g. ANL01FL.
legend: Legend preset (none, right, bottom, top, inside, ...).
palette: Palette preset of the group (rate_ci, dodged) or of the category (stacked, default response).
key: Subject key used to join ADSL.
theme: Theme preset.
title: Figure title.
width, height, dpi, units: Figure size.
file: Write the script to this file.
plot_id: Used in the output file name.

Value

A tfl_code object: the figure's 'ggplot2' script, a character vector of class tfl_code with its specification in attribute spec; printing it shows the script.